PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.32
Common NameAMTR_s00017p00086440
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 553aa    MW: 61401.1 Da    PI: 5.9544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.32genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.4e-06304325223
                                              EETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                               C +Cgk F+r  nL+ H+r H
  evm_27.model.AmTr_v1.0_scaffold00017.32 304 FCLICGKGFKRDANLRMHMRGH 325
                                              5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.42E-5301328No hitNo description
SMARTSM003550.012303325IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552303330IPR007087Zinc finger, C2H2
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-5305354IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035551352385IPR015880Zinc finger, C2H2-like
SMARTSM0035532390412IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEQQFHDYSF NDFTPMGFSP GRFLSSPEQN PRRGGENQFN SETLGYDGSP FDQFQSHPSA  60
LSDPQGLLNS LAFLEQKIHQ LQGVVQSIIR GRNDLDWSDE MSVQKQVVTA ELTSIIIQLM  120
STAGNLLPLT QKSQPSVAPA AMNPYVSNTS ASTSMGTSNL KKGGSGSRSD DKIDWSNVNQ  180
PEFSCNPFGS QIASVTAPNN GKPIKEVESG VNFNREKKYS NQSESLLSNV QERIEEIVDV  240
KEVDPMGYVR GEGSHYNDQS VDDRNYYDDI KEDDDDGDGD NLPPDSYELV ELEKEEILAP  300
NTHFCLICGK GFKRDANLRM HMRGHGDEYK TPAALTKPNK EQSTEPMIVK KYSCPFVGCK  360
RNKSHKKFQP LKTFLCMKNH YKRSHCDKSY TCSRCHNKKF SVLADLKTHE KHCGRDKWQC  420
SCGTTFSRKD KLFGHVALFQ GHMPALPLNE MKGSQALNEG EHALVSGQRG FCDIYSSSSN  480
FKDGGGNEIS DAIMGRSARD DISFGGEDNW HDANPMNPSV LEISDSLFSF PPFSTGNNLM  540
LQGRGNSSSD GF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846973.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
TrEMBLW1PLA80.0W1PLA8_AMBTC; Uncharacterized protein
STRINGERN085540.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-104C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]