PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00011.229
Common NameAMTR_s00011p00266130
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SRS
Protein Properties Length: 216aa    MW: 22320.1 Da    PI: 9.7832
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00011.229genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702101.21.9e-31134194464
                                    DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 
                                               gt++CqdCGnqakkdC h+RCR CCks gfdCathvkstWvpaa+rr r+ ++a +s+ aa
  evm_27.model.AmTr_v1.0_scaffold00011.229 134 GTTTCQDCGNQAKKDCLHRRCRNCCKSPGFDCATHVKSTWVPAARRRGRHMAAAVTSEGAA 194
                                               789*********************************************9777766655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-28135192IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.1E-26137179IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
THRDGTKGRE NQVRGGTVPR RPGEGVPDWG AGSSPPFDLC SAVAGELCLG FSGSSASAPS  60
AAGSSWLRLL NYGSIPLLQD IPMVLINSPF HDPTSASSGP AGGPSYCHQL VPEHSHSQGP  120
ERRGGESSGN TVGGTTTCQD CGNQAKKDCL HRRCRNCCKS PGFDCATHVK STWVPAARRR  180
GRHMAAAVTS EGAAAGGGKK PRLAAPLPLS LKRKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854799.22e-96protein LATERAL ROOT PRIMORDIUM 1
TrEMBLW1NI021e-154W1NI02_AMBTC; Uncharacterized protein (Fragment)
STRINGERM948051e-155(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.15e-18Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]