PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 401aa MW: 44511.3 Da PI: 9.0895

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.492	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	65.6	9e-21	20	73	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kp l+WtpeLH+ F++ v++LGG ++ Pk ++++m+++gLt+ h+kSHLQ+ R evm_27.model.AmTr_v1.0_scaffold00010.492 20 KPMLKWTPELHQLFLDTVARLGGLDEVSPKVMVRAMGIPGLTVFHLKSHLQRER 73 6889***********************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.32E-10	18	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-19	18	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-14	20	75	IPR006447	Myb domain, plants
Pfam	PF14379	7.1E-9	127	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MERSANEGVI VPLPLTHATK PMLKWTPELH QLFLDTVARL GGLDEVSPKV MVRAMGIPGL 60 TVFHLKSHLQ RERYKRAKAQ GLVHSRSLRN AMSNGDPWIQ SMDAMGGIRR MRGAIFPPDE 120 NIRMEEEAIQ KPISMKREML QRIEVQKHLK LRMEAQTRYL QTVLERAKTA LSSYNLDSSG 180 VEAFRAELSE LALSVVIHDY MDTAISKNKA SEFASPQMEN QRMTGMGASG YHAPKPQVNY 240 GSGNSTLSSP KSPLTSLTMD VSMQGHNYEL RFNKSCVELI PVMRGGPMVA TNRASRSING 300 NNAVSLILQM GADRKEEGQE PPLGRKSVRM EECKRVKETD IGIRETDMEP PHVDQVSSVS 360 FMKSVEPSDK LGNHENGGLK LVMGFDLNAC CDPLIIAIDK *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MERSANEGVI VPLPLTHATK PMLKWTPELH QLFLDTVARL GGLDEVSPKV MVRAMGIPGL  60
TVFHLKSHLQ RERYKRAKAQ GLVHSRSLRN AMSNGDPWIQ SMDAMGGIRR MRGAIFPPDE  120
NIRMEEEAIQ KPISMKREML QRIEVQKHLK LRMEAQTRYL QTVLERAKTA LSSYNLDSSG  180
VEAFRAELSE LALSVVIHDY MDTAISKNKA SEFASPQMEN QRMTGMGASG YHAPKPQVNY  240
GSGNSTLSSP KSPLTSLTMD VSMQGHNYEL RFNKSCVELI PVMRGGPMVA TNRASRSING  300
NNAVSLILQM GADRKEEGQE PPLGRKSVRM EECKRVKETD IGIRETDMEP PHVDQVSSVS  360
FMKSVEPSDK LGNHENGGLK LVMGFDLNAC CDPLIIAIDK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020519140.1	0.0	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_020519144.1	0.0	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_020519148.1	0.0	protein PHR1-LIKE 3-like isoform X2
TrEMBL	W1NG98	0.0	W1NG98_AMBTC; Uncharacterized protein
STRING	ERM94516	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-37	myb-related protein 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00010.492

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]