PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.349
Common NameAMTR_s00010p00249970, LOC18422401
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 445aa    MW: 49853.7 Da    PI: 9.6548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.349genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08131172345
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                               +WT+eE ++l d+++q+  + +  Ia ++++ R+ +++ksr++
  evm_27.model.AmTr_v1.0_scaffold00010.349 131 NWTKEETDQLFDLCEQFDLR-FIVIADRFPTSRSTEELKSRYY 172
                                               8*******************.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.3E-30104178IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007172.6E-7128177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-6130174IPR009057Homeodomain-like
SuperFamilySSF466893.43E-6130176IPR009057Homeodomain-like
CDDcd116584.08E-17132174No hitNo description
PfamPF054995.6E-6310372IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MADAKDILGL PKTHFPSTQE KRPKPPKESQ RKPDGVSREV YALMGGLPPL MPTLDISQLK  60
RKPPSDKEKI SWQWLPFTSS ARTDNLKLYH WVKIVNGVPP TGDYSFAKYN KSVDIVRYTD  120
EEYEKYLTDP NWTKEETDQL FDLCEQFDLR FIVIADRFPT SRSTEELKSR YYAVSRALVI  180
AKAPPSGDVS GHPLVKDPYN ITHEVERKRQ LSTVLSNPKQ PERKDAEVLA EAKRVADLRI  240
SGKDAEEPEL PANTESVAPD AVAVDCVSPS PIPQPPASTA DSASTPASLR MLRVYLRTTL  300
LEQMVQAASS SAGLRTIKRV DQTLQELGVL KPKVPTKAVC AEHIELRKEI LTLLNLQKQV  360
QYKEAEVSTF RDNPYSDTIP TPSPPKRSHR GGDQDRLFIR DSDGFSGERV GKREHKRKAP  420
GRYPEAPPSP PHSKRARKMK ASDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-21103188493DNA methyltransferase 1-associated protein 1
4iej_A3e-21103188493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827136.10.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLW1NFX00.0W1NFX0_AMBTC; Uncharacterized protein
STRINGERM943730.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6713810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-173MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]