PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bZIP

Protein Properties

Length: 367aa MW: 41817.6 Da PI: 8.8018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.267	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.9e-11	76	120	2	46
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +++k+ rr+ +NReAAr+sR+RKka++++Le +L++ ++L evm_27.model.AmTr_v1.0_scaffold00010.267 76 PSDKVLRRLHQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELE 120 689****************************98777776665443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-9	75	127	No hit	No description
SMART	SM00338	4.3E-6	75	135	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-8	77	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	77	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.06E-7	79	131	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-29	165	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNSPSTQFAI SRSMGMLDPN YQYNIWEEPF KAEHSPNSGQ SMLDDADVKI DMRSENVVTH 60 GKIALMKGSD QAAVKPSDKV LRRLHQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELE 120 RARQQVIEYM SRLSKYGLYD LLKLAECAAA FELEYANWVE EQNRQLDDLR TALQAHVTDQ 180 DLRKHVDSGM AHYDSLFRMK SFAAMTDVFY IMSGMWKSGA ERSFMWIGGY RPSELLKILH 240 PKLHPLSEQQ LVDVWNLQQS SQQAEDALSQ GMENLNQTLA AAMASDPIGA PNVSNYMGQM 300 AVAMGKLEDL QNFVHQADNL RQQTLKQMHR ILTNRQAARG LLALGDYLQR LRTLSSLWAA 360 RPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNSPSTQFAI SRSMGMLDPN YQYNIWEEPF KAEHSPNSGQ SMLDDADVKI DMRSENVVTH  60
GKIALMKGSD QAAVKPSDKV LRRLHQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELE  120
RARQQVIEYM SRLSKYGLYD LLKLAECAAA FELEYANWVE EQNRQLDDLR TALQAHVTDQ  180
DLRKHVDSGM AHYDSLFRMK SFAAMTDVFY IMSGMWKSGA ERSFMWIGGY RPSELLKILH  240
PKLHPLSEQQ LVDVWNLQQS SQQAEDALSQ GMENLNQTLA AAMASDPIGA PNVSNYMGQM  300
AVAMGKLEDL QNFVHQADNL RQQTLKQMHR ILTNRQAARG LLALGDYLQR LRTLSSLWAA  360
RPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621686.1	0.0	transcription factor TGA2.2 isoform X1
Refseq	XP_020522128.1	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q39162	1e-130	TGA4_ARATH; Transcription factor TGA4
TrEMBL	W1NFN7	0.0	W1NFN7_AMBTC; Uncharacterized protein
STRING	ERM94291	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2679	11	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-115	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00010.267

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]