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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00010.106 |
Common Name | AMTR_s00010p00148880, LOC18422344 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
GRAS |
Protein Properties |
Length: 557aa MW: 60999.4 Da PI: 5.4398 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00010.106 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 452.7 | 2.3e-138 | 191 | 552 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69
lv++L++cAeav+++++++a+al++++ la +++ +m+++a++f+eALa+r++r ++p++t
evm_27.model.AmTr_v1.0_scaffold00010.106 191 LVHTLMACAEAVQQENMNAAEALVKQIGMLAVSQAGAMRKVATFFAEALARRIFR--------FHPQDT 251
689****************************************************........666665 PP
GRAS 70 seknsseelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpe 137
+ s+ l++ f+e++P+lkf+h+taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+
evm_27.model.AmTr_v1.0_scaffold00010.106 252 V-DLFSDI---LQMhFYETCPYLKFAHFTANQAILEAFAGKKRVHVIDFSMKQGMQWPALMQALALRPG 316
4.223333...3334****************************************************** PP
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaV 204
gpp +R+Tg+g+p++++++ l+++g++La++Ae+++v+fe++ +va++l+dle +L+v+p E++aV
evm_27.model.AmTr_v1.0_scaffold00010.106 317 GPPAFRLTGIGPPQPDNTDPLQQVGWKLAQLAETIHVEFEYRGFVARSLADLEAYMLDVRPsdVEVVAV 385
*************************************************************999***** PP
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.e 272
n++++lh+ll+++ +l++ vL v+ l+Pk+v++veqea+hn++ F++rf+eal+yys+lfdsl
evm_27.model.AmTr_v1.0_scaffold00010.106 386 NSIFELHNLLAQPSALDK----VLASVRALRPKIVTIVEQEANHNGPVFMDRFTEALHYYSTLFDSLeG 450
**********88888887....*********************************************66 PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
+lp+ s++ +++++++lgr+i+n+vacega+r+erhetl +Wr+r+++aGF pv+l+++a qa++ll
evm_27.model.AmTr_v1.0_scaffold00010.106 451 CGLPPGSND-QVMSEVYLGRQICNIVACEGADRVERHETLTQWRARMGAAGFAPVHLGSNAFRQASMLL 518
778887765.6778888**************************************************** PP
GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ +dgy+vee++g+l+l W++rpL+++SaW+
evm_27.model.AmTr_v1.0_scaffold00010.106 519 TLFSgGDGYKVEENNGCLMLAWHTRPLIATSAWQ 552
*********************************6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006808 | Biological Process | regulation of nitrogen utilization |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0010218 | Biological Process | response to far red light |
GO:0010233 | Biological Process | phloem transport |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:2000033 | Biological Process | regulation of seed dormancy process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 557 aa
Download sequence Send
to blast |
MKRAQGDSSS GAYRASHGKS KMQEPQDAGV DELLASLGYN VRASDMAEVA QKLEQLEMVM 60 GTAQEDGISH LASETVHYNP SDIATWIESM LTELNFPPNL GAPYAPNPSN NCWTAAELPP 120 PPLPDSNAAE SCSSNLHPPQ LFDSSDFGTS SQISSLVYQS PPREKKRIKA APPPEPRPVV 180 VVDSQETGIR LVHTLMACAE AVQQENMNAA EALVKQIGML AVSQAGAMRK VATFFAEALA 240 RRIFRFHPQD TVDLFSDILQ MHFYETCPYL KFAHFTANQA ILEAFAGKKR VHVIDFSMKQ 300 GMQWPALMQA LALRPGGPPA FRLTGIGPPQ PDNTDPLQQV GWKLAQLAET IHVEFEYRGF 360 VARSLADLEA YMLDVRPSDV EVVAVNSIFE LHNLLAQPSA LDKVLASVRA LRPKIVTIVE 420 QEANHNGPVF MDRFTEALHY YSTLFDSLEG CGLPPGSNDQ VMSEVYLGRQ ICNIVACEGA 480 DRVERHETLT QWRARMGAAG FAPVHLGSNA FRQASMLLTL FSGGDGYKVE ENNGCLMLAW 540 HTRPLIATSA WQIALP*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |