PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.105
Common NameAMTR_s00010p00144270, LOC18422326
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 371aa    MW: 39817.8 Da    PI: 6.1213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.105genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14187233354
                                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  evm_27.model.AmTr_v1.0_scaffold00010.105 187 KSHSEAERRRRERINTHLHTLRSLLPNT-----TKTDKASLLAEVIQHVKEL 233
                                               79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.41E-56575No hitNo description
PROSITE profilePS5088817.161184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-15188242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-5197236No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-4271341No hitNo description
CDDcd048734.28E-8271342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGSEAHGSK AFSDFNGGGY IFPEMNQQRP MPPPYMTTEL GSYNNNSGGG LAIPGNSVVA  60
WPMPPPPPPP PPPPPVVPSF NPTVDPAVHF AVQAREHERF LACMGGGGLT NRPSIYSGLG  120
SSSSSSPSTF QGFGRRGIQF GYERENNVIY GGVSDGVGIG IGIGGGGDAG KMSAQEIMDA  180
KALAASKSHS EAERRRRERI NTHLHTLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTAEI  240
AETMPIPTET DELTVDPDDS YGEGKLVIKA SICCEDRSDL FPDIIKALKA LRLRTLKAEI  300
TTLGGRIKNV LLVTNEEEGE GREQDSNAPS INSIQDALKA VMERPLSEES SSTNIKRQRT  360
NAAMLEHRSM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826892.20.0transcription factor bHLH30
SwissprotQ9S7Y13e-76BH030_ARATH; Transcription factor bHLH30
TrEMBLW1NG040.0W1NG04_AMBTC; Uncharacterized protein
STRINGERM941290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]