PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00009.105 | ||||||||
Common Name | AMTR_s00009p00175450, LOC18422953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24253.7 Da PI: 7.9658 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 64 | 111 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL +l + + +K +K++iL A++ +++L evm_27.model.AmTr_v1.0_scaffold00009.105 64 TKACREKMRRDRMNDRFLELSCVLEPG---RPPKTDKSAILCDAIRVLNQL 111 5678****************9888887...89****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.195 | 60 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 64 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.99E-9 | 64 | 116 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-12 | 65 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-7 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 67 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSFQDSSSW VWEDYNLIEE VPSTGFSWLG STSVGIGKPS KDAGCEKVSL RKRGPEESFS 60 GPGTKACREK MRRDRMNDRF LELSCVLEPG RPPKTDKSAI LCDAIRVLNQ LRTEIQELKN 120 ANEKLQEDIT NLKAEKNELR DEKLKLKGDK EILEKQIKGM SAPSPPFLAH HPTPVFAAPL 180 NKTMAFPHYN GMAMWQWMPP SAVDTSQDHV LRSPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827502.1 | 1e-161 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 6e-64 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | W1NHE2 | 1e-159 | W1NHE2_AMBTC; Uncharacterized protein | ||||
STRING | ERM94918 | 1e-160 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00009.105 |
Entrez Gene | 18422953 |