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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00007.36 |
| Common Name | AMTR_s00007p00069060 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
NF-X1 |
| Protein Properties |
Length: 456aa MW: 50079.1 Da PI: 7.9732 |
| Description |
NF-X1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00007.36 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-NF-X1 | 19.6 | 2e-06 | 191 | 209 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20
CG H C lCH+GpCppCp+
evm_27.model.AmTr_v1.0_scaffold00007.36 191 CG-HECLLLCHPGPCPPCPR 209
**.****************7 PP
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| 2 | zf-NF-X1 | 16.4 | 2e-05 | 243 | 262 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20
CG H+Cq+ CH G C pC++
evm_27.model.AmTr_v1.0_scaffold00007.36 243 CGLHQCQENCHNGSCTPCQK 262
******************85 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57850 | 5.53E-5 | 69 | 112 | No hit | No description |
| PROSITE profile | PS50089 | 8.565 | 74 | 146 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS01359 | 0 | 74 | 145 | IPR019786 | Zinc finger, PHD-type, conserved site |
| SMART | SM00438 | 0.0089 | 191 | 209 | IPR000967 | Zinc finger, NF-X1-type |
| Pfam | PF01422 | 0.0013 | 191 | 208 | IPR000967 | Zinc finger, NF-X1-type |
| CDD | cd06008 | 7.72E-10 | 233 | 281 | No hit | No description |
| SMART | SM00438 | 0.024 | 243 | 262 | IPR000967 | Zinc finger, NF-X1-type |
| Pfam | PF01422 | 0.0014 | 243 | 260 | IPR000967 | Zinc finger, NF-X1-type |
| CDD | cd06008 | 6.13E-9 | 286 | 333 | No hit | No description |
| Pfam | PF01422 | 5 | 290 | 313 | IPR000967 | Zinc finger, NF-X1-type |
| SMART | SM00438 | 0.028 | 296 | 315 | IPR000967 | Zinc finger, NF-X1-type |
| CDD | cd06008 | 2.75E-9 | 340 | 389 | No hit | No description |
| SMART | SM00438 | 5.3 | 350 | 370 | IPR000967 | Zinc finger, NF-X1-type |
| Pfam | PF01422 | 0.027 | 350 | 369 | IPR000967 | Zinc finger, NF-X1-type |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MAFSTAHPLS SSSSSEDDDD SNYNGIRKPK LKASTMEDDP IFRPYLQIHG TSPSHSLSKI 60
QAFLLASRSG ALACLICLEK VRHSHPIWAC KLGCYAIFHL PCIQNWARQS SNLVVERAMV 120
RLSRDHFPEA AAFALENANW HCPKCRIEYP KILIPHTYVC YCGKLENPTP DPWIVSHSCG 180
EFCNLPLKGN CGHECLLLCH PGPCPPCPRL IESPCFCGSN LEVRRCSAKD FSCNKPCSKL 240
LACGLHQCQE NCHNGSCTPC QKKGIHQCMC GKVKEERACS DKIFRCENPC GRELDCKKHV 300
CSKGCHSGSC GVCELQGKMT CPCGNKEYKG IACDALVPSC GATCERMLNC GFHRCPERCH 360
HGPCVDTCRI VMTKSCRCGS LRKQASCCQE LFHAIKVWFV RENVKLNEIV GGMPVNGGVV 420
MGTVHPAQRY VTGSFDVETI NAPHAATEVL VLPAL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G05660.1 | 1e-116 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
