PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.134
Common NameAMTR_s00007p00170710, LOC18433497
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 221aa    MW: 24331.8 Da    PI: 10.4761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.134genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-144591354
                                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                              ++h+e+ErrRR+riN  +++Lr+llP        K++Ka+ L+++v+ +k+L
  evm_27.model.AmTr_v1.0_scaffold00007.134 45 KSHSEAERRRRERINGHLSTLRQLLPCT-----SKMDKASLLREVVDSLKEL 91
                                              79*************************7.....6*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8314291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-54494No hitNo description
Gene3DG3DSA:4.10.280.101.2E-134594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-124591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1545103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-124897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-6131191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MHQQADGSHS PAFISPSLQR GPVPSPRALG TKTPSDDAQA VASQKSHSEA ERRRRERING  60
HLSTLRQLLP CTSKMDKASL LREVVDSLKE LKRKASEISK DLSCPTDTDE LRVELCNSGS  120
PNSAFPLIKA SFCCEDRPQL VADLIRALQS LRLRTVKANI STLGGRVRND FIFMARERVS  180
VTTIQEALRA VLIRGSNGES TLDACNKRQK RILSFVHGLF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843648.11e-159transcription factor bHLH30
TrEMBLW1PBL21e-158W1PBL2_AMBTC; Uncharacterized protein
STRINGERN053231e-159(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-43bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]