PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.562
Common NameAMTR_s00001p00272780
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HB-PHD
Protein Properties Length: 801aa    MW: 88022.5 Da    PI: 5.3878
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.562genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.36.3e-145836281055
                                               HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                  Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                                 ++ L + F++n+yp++e+r++LA++lg+t +qV+ WF N R   
  evm_27.model.AmTr_v1.0_scaffold00001.562 583 LVTQSLHNSFKENMYPTKETRAKLAEELGITFKQVSKWFENARVAL 628
                                               56899**************************************765 PP
2PHD37.26.7e-13239294151
                                               SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                                       PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                               +C+ Cg+     +++++lCdg C++ fH+ Cl ++l +e++p g   wlC+ C++k
  evm_27.model.AmTr_v1.0_scaffold00001.562 239 FCAKCGSkdVPPDNDIILCDGiCNRGFHQMCLVPPLLKEQIPPGdeGWLCPGCECK 294
                                               6999**954445********88********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.11E-13230297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.6E-13235293IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.816237294IPR019787Zinc finger, PHD-finger
CDDcd155042.91E-28239291No hitNo description
PfamPF006281.9E-10239294IPR019787Zinc finger, PHD-finger
SMARTSM002493.4E-9239292IPR001965Zinc finger, PHD-type
PROSITE patternPS013590240291IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003899.4E-12574635IPR001356Homeobox domain
SuperFamilySSF466893.51E-12579630IPR009057Homeodomain-like
CDDcd000867.63E-13579632No hitNo description
PfamPF000462.8E-11583629IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-13585633IPR009057Homeodomain-like
PROSITE profilePS5007113.75586631IPR001356Homeobox domain
PROSITE patternPS000270606629IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MDEASHGEQN CPRSLILDSE RCSTSFEQTT KEEVPSIGVH SLEIERLTPA PIDPGYAGPN  60
SGIIGRNTAS KGNSSRQEWK GKKVASQVGS RSYFLRSSSN GVRVLRPRSI GTSKTSPAAS  120
SKSSPIMPER RKSRREKRKL KEVLSNDEYS RTRKSVRYLL ARINFEQGLI DAYSGEGWKG  180
QSQEKVKPEK ELKRAEDEIV RRKLRIRDLF QHLQTLCEEG RIHESLFDSE GKIYSEDIFC  240
AKCGSKDVPP DNDIILCDGI CNRGFHQMCL VPPLLKEQIP PGDEGWLCPG CECKAFCVDL  300
VNDYLGTDLL IEDGWEKVFA EAAALASGDK QYDDLGLPSD DSEDNDYNPD GPDIDDEAQN  360
SSSSSEESDM TSGSSDSESS SSDDEASSLD EGSGSSLPGP FLSADLSLNG SEGRSNQKKP  420
RMNSELLSIL EPESNGKVVS PLPGKRNRER LDYKKLHDED YGNVSSDSSD DEDWVAMDTS  480
KRKKSGGVGR GTRLPTKHCT LSPGSLKIYE SIPSLPETQI LLQKPNSETI QVGSSLTHNI  540
PGNSQIQVHG VSASGVKSHV GGGEHISSRN GPVTPLSKRF GRLVTQSLHN SFKENMYPTK  600
ETRAKLAEEL GITFKQVSKW FENARVALRN AKLLPPGKTV SPSVSHPMPS MACQMPTTSG  660
GMEEKPNETG GEEPEQRRET CGEINSLSSL TRLDQRDGGV PEELLETNAS LVEASAKNSQ  720
RVRTPQKASQ ENNEISAFFQ PRLVRLLTNW LFSIESFDLW FGLTEMLGRL SPVEAVSFRL  780
VWLLKLLVNL GPLVLIVVIV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629041.10.0homeobox protein HOX1A isoform X2
RefseqXP_020517257.10.0homeobox protein HOX1A isoform X2
TrEMBLW1NN250.0W1NN25_AMBTC; Uncharacterized protein
STRINGERM966850.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]