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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00001.233 |
| Common Name | AMTR_s00001p00223800 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
SRS |
| Protein Properties |
Length: 216aa MW: 22616.2 Da PI: 8.9625 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00001.233 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 113.9 | 2.2e-35 | 20 | 95 | 4 | 78 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaask 73
g+ +CqdCGnqakkdC+h+RCRtCCksrgf+C th+kstWvpa++rrerqqqlaa++++++++ ++++k
evm_27.model.AmTr_v1.0_scaffold00001.233 20 GGNTCQDCGNQAKKDCVHQRCRTCCKSRGFECPTHIKSTWVPASRRRERQQQLAALHHHQQQQLvLHDKPK 90
5679****************************************************999988875666667 PP
DUF702 74 rkrel 78
r r+
evm_27.model.AmTr_v1.0_scaffold00001.233 91 RVRQA 95
76654 PP
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| 2 | DUF702 | 71.3 | 2.9e-22 | 91 | 152 | 99 | 153 |
DUF702 99 eletss.....lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153
+ ++s lP+ev++ avfrcvrvssv++ +eee+aYqtav igG vfkG+Lyd+G++
evm_27.model.AmTr_v1.0_scaffold00001.233 91 RVRQASnlgpgLPSEVRTGAVFRCVRVSSVEEggDEEEYAYQTAVAIGGRVFKGVLYDRGPD 152
33333346777*********************745667**********************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MLGSGQGSEG RPSSGLVLGG GNTCQDCGNQ AKKDCVHQRC RTCCKSRGFE CPTHIKSTWV 60
PASRRRERQQ QLAALHHHQQ QQLVLHDKPK RVRQASNLGP GLPSEVRTGA VFRCVRVSSV 120
EEGGDEEEYA YQTAVAIGGR VFKGVLYDRG PDPAASGSGG GGGGASSSSL GEGGGGGVSS 180
SMLAASLLDP TAMFSHNPYL SAEFSFVPRR NSSRL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK102444 | 2e-34 | AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence. |
| GenBank | AP003683 | 2e-34 | AP003683.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0431G06. |
| GenBank | AP004368 | 2e-34 | AP004368.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1139B11. |
| GenBank | AP014957 | 2e-34 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 2e-34 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
