PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00001.225 | ||||||||
Common Name | AMTR_s00001p00217560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 27214.9 Da PI: 9.0023 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr gi+KKA+EL vLCdaev++i+fsstgk+ ey+s evm_27.model.AmTr_v1.0_scaffold00001.225 9 KRIENPTNRQVTYSKRRGGIIKKAKELTVLCDAEVSLIMFSSTGKFSEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 66.3 | 1.1e-22 | 94 | 179 | 15 | 100 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++q++l +Lk+e + L++ +R+ +Ged+++L++keL+ Leq+Le+ +k+iR+kKn+l+++q+e+ +k+ evm_27.model.AmTr_v1.0_scaffold00001.225 94 QKMQRDLGNLKEESNRLRKLIRQKMGEDINELKYKELRDLEQNLEEWVKRIRDKKNHLVTNQTETCKKR 162 89******************************************************************* PP K-box 84 ekelqeenkaLrkklee 100 k+l+e+nk++r+++ee evm_27.model.AmTr_v1.0_scaffold00001.225 163 IKNLEEQNKMMRHMMEE 179 ************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.25E-41 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-37 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.803 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-20 | 94 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRGKIEIKR IENPTNRQVT YSKRRGGIIK KAKELTVLCD AEVSLIMFSS TGKFSEYCSP 60 STSTKKIYDR YQQVSETNLW DTHYEENGFF LVLQKMQRDL GNLKEESNRL RKLIRQKMGE 120 DINELKYKEL RDLEQNLEEW VKRIRDKKNH LVTNQTETCK KRIKNLEEQN KMMRHMMEED 180 EAERGLEDDG DYESQLALGV RNTHLFAYRM RPAEGNIHDR GYGLNDLRLG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 76 | 1 | 74 | MEF2C |
5f28_B | 2e-17 | 1 | 76 | 1 | 74 | MEF2C |
5f28_C | 2e-17 | 1 | 76 | 1 | 74 | MEF2C |
5f28_D | 2e-17 | 1 | 76 | 1 | 74 | MEF2C |
6byy_A | 2e-17 | 1 | 76 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 76 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 76 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 76 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY337743 | 0.0 | AY337743.1 Amborella trichopoda APETALA3-like protein AP3-1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011628954.1 | 1e-160 | MADS-box transcription factor 16 isoform X2 | ||||
Swissprot | Q003J2 | 2e-80 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | W1NLE9 | 1e-169 | W1NLE9_AMBTC; Uncharacterized protein | ||||
STRING | ERM96348 | 1e-170 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5199 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-55 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00001.225 |
Publications ? help Back to Top | |||
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