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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00001.223 |
| Common Name | AMTR_s00001p00215760, LOC18424278 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
DBB |
| Protein Properties |
Length: 246aa MW: 27245.8 Da PI: 6.8715 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00001.223 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 18.6 | 3.8e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
C+ +++ e++ fC ++ lC C + H+ H+
evm_27.model.AmTr_v1.0_scaffold00001.223 4 QCDVCNKAEASVFCCADEAALCSACDQRVHHAnklagkHR 43
7****************************64447777766 PP
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| 2 | zf-B_box | 30.9 | 5.5e-10 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
+ ++C+ ++e ++ lfC++++ lC++C ++H H
evm_27.model.AmTr_v1.0_scaffold00001.223 54 QGPRCDVCQERRAFLFCQEDRAILCRECDIAIHTAndltyrH 95
789******************************545566666 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MKIQCDVCNK AEASVFCCAD EAALCSACDQ RVHHANKLAG KHRRFSLHHP CSDQGPRCDV 60
CQERRAFLFC QEDRAILCRE CDIAIHTAND LTYRHNRFLL TGVKLQSIAA DTLENKKAKM 120
PATSSTPQQN SPAPLSSTSS SISEYLTHTI PGWRVDDFLT GAGSLSPPHN NDGLLETDEL 180
LKLVESDFNG DCFFPSDDFI LQIPKQGKGW GAERFMSSIN GGEHHGFTVP QISPPTKRQR 240
LVWQM*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
[PMID:27325768] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis.
Mol Plant, 2017. 10(9): p. 1206-1223
[PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
Plant Physiol., 2018. 176(3): p. 2365-2375
[PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
Plant Physiol., 2018. 176(4): p. 2963-2976
[PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
Plant Physiol., 2018. 177(1): p. 369-380
[PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
Plant Cell Environ., 2018. 41(8): p. 1912-1925
[PMID:29748960]
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