PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_99.39
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 352aa    MW: 39005.1 Da    PI: 7.8634
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_99.39genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-11245301155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  evm.model.supercontig_99.39 245 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 301
                                  57*******************4444.2455535555.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-15245311IPR016177DNA-binding domain
PfamPF008474.5E-9245301IPR001471AP2/ERF domain
CDDcd000181.15E-20245311No hitNo description
Gene3DG3DSA:3.30.730.103.1E-12246310IPR001471AP2/ERF domain
PROSITE profilePS5103217.319246309IPR001471AP2/ERF domain
SMARTSM003801.1E-22246315IPR001471AP2/ERF domain
PRINTSPR003673.4E-5247258IPR001471AP2/ERF domain
PRINTSPR003673.4E-5291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNNWLGFSLS PQQLPSQPDH PHSQKAVLPR LCFNSDGISG DCFDLMTSPH DSTPPAFSIL  60
EALNTNHSSQ DWNMKGLGMN PHSSYKPSSD LSMLMGSSCN TQGLVRSEEE PKLENFLGQG  120
HSSSVQDQAR LDHVYSININ GEEDHSSCSS SINNTIGLSM IKTWLRNQPP PTQSPESVPK  180
HNNGGGPQTL SLSMSTGSQG CSPPRLTHSN GETCDDINKV QEKTATGSIE EAPRKSIDTF  240
GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW  300
GTTTTTNFPI SNYEKELEEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_99.39
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892799.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-94BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2C9USA61e-153A0A2C9USA6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_99.390.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.14e-94AP2 family protein