PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.83
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 238aa    MW: 26424.9 Da    PI: 8.1398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.83genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-1366112354
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  evm.model.supercontig_92.83  66 KNHKEAEKRRRERINSHLNKLRTLLPCN-----SKTDKASLLAKVVQRVKEL 112
                                  58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.54863112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1066112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.84E-1266115No hitNo description
SuperFamilySSF474593.93E-1467125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1467120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1169118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-4150214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQPAENSELY QFLTENGVGS YGFLQNCGEY SAAMSSFCGS TSSFYPLDLS GISDTTPQDR  60
ALAALKNHKE AEKRRRERIN SHLNKLRTLL PCNSKTDKAS LLAKVVQRVK ELKQQTNEIS  120
GLESFPSETD EISVLSGECS SDGRLIFKAS LCCEDRSDLL PELIEILKSL HLKTLRAEIA  180
TLGGRIRNVL VVAADKDHSS VESVHFLQNA LKSLLERSTS NDRSKRRRAL DHHKIFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.83
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893378.11e-174transcription factor bHLH106-like
SwissprotO806746e-92BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A061F2R41e-126A0A061F2R4_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGevm.model.supercontig_92.831e-173(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]