 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_85.56 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 326aa MW: 35940.3 Da PI: 8.4876 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_85.56 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 52.6 | 7.9e-17 | 177 | 231 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k
evm.model.supercontig_85.56 177 RKKLRLSKQQSAFLEESFKEHNTLNPKQKLALARQLSLRPRQVEVWFQNRRARTK 231
778899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125.9 | 1.8e-40 | 177 | 267 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82
+kk+rlsk+q+++LEesF+e+++L+p++K +lar+L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+k
evm.model.supercontig_85.56 177 RKKLRLSKQQSAFLEESFKEHNTLNPKQKLALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQK 258
69******************************************************************************** PP
HD-ZIP_I/II 83 eveeLreelk 92
e +eLr +lk
evm.model.supercontig_85.56 259 ELQELR-ALK 267
*****9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MELALSLGDT SRPPFPFLDK TNKISAGGDL GFCMGLGTGF SPGRSQENGE AEKTGRNGDD 60
CRRSRFPADP PLQLDLLPFS PLPRSQQPPS QLRLPWLTHN LRSEPDGAGH GLDVNRVPAA 120
TEETEEGITL SSSPNSTVSS FQMEFGIGGR SKRETAEIEP ERASSRASDD DENGSTRKKL 180
RLSKQQSAFL EESFKEHNTL NPKQKLALAR QLSLRPRQVE VWFQNRRART KLKQTEVDCE 240
YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV SPTLPSSGAG 300
SGSSSANPQY PFPLKPHKGP QPAAS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 175 | 181 | TRKKLRL |
| 2 | 225 | 233 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
