PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_84.82 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | AP2 | ||||||||
Protein Properties | Length: 551aa MW: 60544.3 Da PI: 6.9728 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 174 | 230 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g evm.model.supercontig_84.82 174 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 230 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 275 | 324 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g evm.model.supercontig_84.82 275 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 324 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-19 | 174 | 240 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-15 | 174 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-9 | 174 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 175 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 175 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 175 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 176 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-18 | 273 | 334 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.39E-24 | 273 | 334 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 274 | 332 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 274 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-33 | 274 | 338 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 275 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 314 | 334 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHHSSIP AHLHPSQSHQ FNLGLVSDNM DNPFQAQEWN LINTHGGGEV 60 PKVADFLGVS KTENQADLVG YNEIQANDHS DYALFQSNSI VPAVQSTGAV LTSSSKTYQE 120 FQESTNNLQS LTLSMGSTGN KSSTCETSGD NSTNSSAVEA APRRTLDTFG QRTSIYRGVT 180 RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA YDLAALKYWG TSTTTNFPIS 240 NYEKELEEMK HMTRQEFVAA IRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL 300 YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESNTLPIG GGAAKRLKEA 360 QAMESSRKRE EMIALGSTTF SYGGSSSNTR LQAYPLMQIP FDHHHQPSQP LLTLQNPEIS 420 HYDPSFHHNY LQTQLHLHHQ TGSSSSSYLQ QQSSQNAQFY NSYIQSNPAL LHGLVNMDHN 480 NGSSSGSYST GGYLGNGSGI GLAPNSTAIG SAEDLSLVKV DYDMPSAGYG GWSGDSVPGS 540 NPGVFTMWND * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_84.82 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894070.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K2BA87 | 0.0 | A0A2K2BA87_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_84.82 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_84.82 |