PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_8.53 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24594 Da PI: 9.4625 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.3 | 1.7e-30 | 41 | 129 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkk+k+gkw+vt++++e evm.model.supercontig_8.53 41 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKDKSGKWVVTRFVKE 122 9*******************************************99.9*********************************** PP FAR1 85 HnHelap 91 HnH+l+p evm.model.supercontig_8.53 123 HNHQLVP 129 *****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-29 | 41 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAEDGEMIES SNGKGLANEE CSDMEPYQGM EFESEEAAKV FYDAYATRLG FIMRVDAFRR 60 SMRDGKVVWR RLVCNKEGFR KLRPRRSENR KPRAITREGC KAMIVVKKDK SGKWVVTRFV 120 KEHNHQLVPI PANGRRSIVL SQTPDEKDIK IRELTAELQR ERKRCAAYQE QLDSILRDME 180 EHSDHLTRNI DDIVQSVREI ESKRVANPHS K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_8.53 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907124.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_021907125.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Swissprot | Q9SZL8 | 1e-33 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | F6I1W9 | 1e-129 | F6I1W9_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_8.53 | 1e-156 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 | Representative plant | OGRP3376 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-96 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_8.53 |
Publications ? help Back to Top | |||
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