PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_64.66 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 486aa MW: 50629.2 Da PI: 9.5086 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.supercontig_64.66 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.8 | 4e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ evm.model.supercontig_64.66 136 WKCERCSKKYAVQSDWKAHMKTC 158 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.91E-7 | 59 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.7E-5 | 60 | 82 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.91E-7 | 131 | 157 | No hit | No description |
SMART | SM00355 | 77 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MAVSTASREV SISSSDNQQI QATPLTVVPQ KKKRNLPGMP DPDAEVIALS PKTLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKRV YVCPEPTCVH HNPSRALGDL 120 TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT KEYRCDCGTI FSRRDSFTTH 180 RAFCDALAEE NARSQQTLAV TGGEGNSDQN AKSGVVVASP PPPPLTPSTT IVSPGLSMQS 240 SEMSENSMRV SPPTQGAITC LSSTGTATVT TPRSSCLNTS TVFASIFASS LPAAAALVEP 300 TSLSLSSSLY LSSNGASSSL FPPGGQDRCR YAPSPQPAMS ATALLQKAAQ MGAAASSPSL 360 LRGLGLAVPS SSGQDSHVTA EGNPVTAGLG LGLPSEGTSS LTDGIMGPSS LFGNRPTTLD 420 LLGLGIGAGG ASTSGLSALL PSFGGGFGVG AAPSTSAPSY GRGGNSPGQI WESTPERKPN 480 PSALL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 132 | 193 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 132 | 193 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_64.66 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896421.1 | 0.0 | protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9SCQ6 | 1e-143 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2P5RUL4 | 0.0 | A0A2P5RUL4_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_64.66 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-117 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_64.66 |
Publications ? help Back to Top | |||
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