PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24519.8 Da PI: 9.9429 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgkl+e++s evm.model.supercontig_6.199 9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMISNTGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 78.4 | 1.8e-26 | 71 | 158 | 1 | 88 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 yq++ g++l++++++++q +l+kL++ +++L+re+R++ GedL++ s++eL+ Leq++ ++l+ iR++K + +++q+++ +k evm.model.supercontig_6.199 71 YQSTLGVDLWSTHYQKMQDNLKKLREINNKLRREIRQRSGEDLHDASVEELRGLEQNMASALEVIRERKFHTIKTQTDTYKK 152 78888999************************************************************************** PP K-box 83 kekelq 88 ke + + evm.model.supercontig_6.199 153 KETRYH 158 **9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-36 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.49E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 8.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-18 | 82 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.19 | 84 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMISN TGKLHEFISP 60 TATTKKMIDQ YQSTLGVDLW STHYQKMQDN LKKLREINNK LRREIRQRSG EDLHDASVEE 120 LRGLEQNMAS ALEVIRERKF HTIKTQTDTY KKKETRYHGD PHYGLIENER DYESAIALAN 180 GASNLHAFRL HHNHHPNDLH LGGFGCSDLR LA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 1e-14 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 1e-14 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 1e-14 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.199 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF562499 | 0.0 | EF562499.1 Carica papaya B-class MADS-box protein TM6-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908245.1 | 1e-154 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | Q003J2 | 1e-114 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A5JSC6 | 1e-153 | A5JSC6_CARPA; B-class MADS-box protein TM6-2 | ||||
STRING | evm.model.supercontig_6.199 | 1e-158 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5261 | 27 | 50 | Representative plant | OGRP5199 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-67 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.199 |
Publications ? help Back to Top | |||
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