PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.130
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 337aa    MW: 37183 Da    PI: 6.5308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.130genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09205252455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  evm.model.supercontig_6.130 205 SHSLAERARREKISKKMKCLQDLVPGC----NRITGKAGMLDEIINYVQSLQ 252
                                  8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16199270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-9199256No hitNo description
Gene3DG3DSA:4.10.280.101.6E-17201270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.218201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7205252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLQGLISPES FAGNGAVDLM VQERLKWQRQ QQPQPATDVV GSQLSSIEFS SAPQFHGLLE  60
NVAGGRLFVQ PKRQEAFLGS YELPKFGKFS VVGTDLVGGR VDFPASDCRV EAADMAMVMK  120
KEEEKVEGEA FGSTEEQKFN KRKTEGVGRE EYKEKRIKTE VETESSFKAK SSTDTETSKQ  180
NSTTSQAQKP DYIHVRARRG QATDSHSLAE RARREKISKK MKCLQDLVPG CNRITGKAGM  240
LDEIINYVQS LQRQVEFLSM KLAALNPSVE FNPSQQCTAN CMLDVSMDFI SAQTPPLEST  300
SSSMTSLIFT GIDDFGLCHE QQRDLAGTGT KLVRGN*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907848.10.0transcription factor HBI1-like
SwissprotQ9ZPW32e-64HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A061DFN09e-85A0A061DFN0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3
STRINGevm.model.supercontig_6.1300.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.14e-62bHLH family protein