PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_57.85
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 397aa    MW: 45150 Da    PI: 6.516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_57.85genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13205256155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  evm.model.supercontig_57.85 205 QRMTHIAVERNRRRQMNDHLNSLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 256
                                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.64E-13203260No hitNo description
SuperFamilySSF474591.1E-16204273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.853204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13205268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-11210261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MERLQGPINS CFLEEHLDVE FLEQGFVNQE NWRLEEEEEL HLSIPSLEDK MPFLQMLQSV  60
ESSSFLPFKE PNFQTLLRLQ HVKKPWELNP TLPDMDTQIQ ALEFESCVTH EIVDLDLPSP  120
VKSETKDIQN PHSTSYVEGV SSVSNTNSGE NYPREGNSGS SPPLTHPQIK PRDTHFPKST  180
PPITRERKKR KRTKTTKNKE EVESQRMTHI AVERNRRRQM NDHLNSLRSL MPPSYIQRGD  240
QASIIGGAID FVKELEQLLQ SLETQKRMRK GEGSTDNSVC NSMTGISSNG LVVSRTQSGE  300
EVKAENKSET ADIEVTVIQN HVNMKIQCPR RHGQLLKAIV SLENLRLTVL HLNITTSQSR  360
VHYSFNLKME EECKLGSADE IASAVHQIFR YIIKGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191RKKRKR
2187192KKRKRT
3205216RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_57.85
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897262.10.0transcription factor bHLH67-like
SwissprotQ700E43e-96BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A061DS781e-179A0A061DS78_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGevm.model.supercontig_57.850.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]