PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 530aa    MW: 58539.7 Da    PI: 6.699
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-11240296155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  evm.model.supercontig_55.15 240 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 296
                                  57*******************4444.2344336655.779999**************98 PP
2AP250.16.9e-16339390155
                          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  evm.model.supercontig_55.15 339 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 390
                                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-15240306IPR016177DNA-binding domain
PfamPF008476.2E-9240296IPR001471AP2/ERF domain
CDDcd000181.31E-20240306No hitNo description
SMARTSM003801.8E-22241310IPR001471AP2/ERF domain
PROSITE profilePS5103217.649241304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-13241305IPR001471AP2/ERF domain
PRINTSPR003673.6E-6242253IPR001471AP2/ERF domain
PfamPF008472.9E-10339390IPR001471AP2/ERF domain
CDDcd000186.10E-12339398No hitNo description
SuperFamilySSF541717.85E-18339399IPR016177DNA-binding domain
SMARTSM003807.3E-31340404IPR001471AP2/ERF domain
PROSITE profilePS5103219.177340398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18340398IPR001471AP2/ERF domain
PRINTSPR003673.6E-6380400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQFVSYDT SSAASPHYLI DNFYANGWGN VPKPQVFFTE  60
QTTNQEKEAH QQAVIADSPI LTTFIDPQTH TQPKLEDFLG DSSSLVRYSD SQTETQDSSL  120
TQIYDHQTSA YFNDPQDLKA ITRFQAFSTN SGSEVDDSAS MGRTQLTGGE FTGHSIESSG  180
NELAFSSCPT GALSLGVNNT TANNHNANNQ LSSDNAKAIV SVDNSDGSKK IADTFGQRTS  240
IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE EKAARAYDLA ALKYWGPTAT  300
TNFPISNYGK ELEEMKLVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV  360
AGNKDLYLGT FATEEEAAEA YDIAAIKFRG LNAVTNFEMN RYDVEAIAKS ALPIGGAAKR  420
LKLSLETEQK PIISHPVQPQ PQCSSTGNIN FASSIHPPFS TIPCGIPFDT TLYPHHNLFH  480
HYQTTNIPTT HAPLPISDSS VSTSTMPTPM TLLPQQPAEF FIWPPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897531.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1R3GDZ80.0A0A1R3GDZ8_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_55.150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]