PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_50.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | VOZ | ||||||||
Protein Properties | Length: 455aa MW: 51153.6 Da PI: 6.2961 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 432.6 | 5.3e-133 | 207 | 423 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 pppsafl+pkc+lwdctrpa gs+w+qdycs fhatlalne++pgttp++rp+gi+lkd+ll++al++k++gk+vgip+cega evm.model.supercontig_50.3 207 PPPSAFLRPKCSLWDCTRPALGSDWYQDYCSIFHATLALNEDPPGTTPTVRPGGIGLKDNLLLDALRSKTEGKNVGIPTCEGA 289 89********************************************************************************* PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfe 166 a++k+pwna+elfdl lleget+rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgg+krsyymdpqp+++fe evm.model.supercontig_50.3 290 ASRKCPWNATELFDLGLLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGQKRSYYMDPQPPGCFE 372 *********************************************************************************** PP VOZ 167 whlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 w+lyeyei+++da+alyrlelklv+e+ks+kgkv+kd+++dlqkk+grlta evm.model.supercontig_50.3 373 WRLYEYEIYSFDACALYRLELKLVKERKSPKGKVNKDPVVDLQKKMGRLTA 423 *************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MKNHPRSKCT SISHQTLIDN AKNRVSDLQE RFTNLQAART EGRIGDVAVL EEQVYQSLRE 60 WKAELNAPSP ASSSFGCSLG SFSDDIARML QLCEEEDDAS SAFAEPACLK PESAVQSLCP 120 GNILGVQENC FHNNEAQEQK FQVFDQCKSP KSTMHSTMVN NAELTHQLDY DLLNSHNELN 180 HELFIGASDI EECAKDSGPN ILPSIHPPPS AFLRPKCSLW DCTRPALGSD WYQDYCSIFH 240 ATLALNEDPP GTTPTVRPGG IGLKDNLLLD ALRSKTEGKN VGIPTCEGAA SRKCPWNATE 300 LFDLGLLEGE TVREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MKEFGGQKRS 360 YYMDPQPPGC FEWRLYEYEI YSFDACALYR LELKLVKERK SPKGKVNKDP VVDLQKKMGR 420 LTAEVPSDNN NRYVVRGMPT EHRVINQLTI KALN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_50.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-49 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898421.1 | 0.0 | transcription factor VOZ2-like | ||||
Refseq | XP_021898422.1 | 0.0 | transcription factor VOZ2-like | ||||
Swissprot | Q9SGQ0 | 1e-167 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A061E3L6 | 0.0 | A0A061E3L6_THECC; Vascular plant one zinc finger protein isoform 1 | ||||
STRING | evm.model.supercontig_50.3 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 1e-139 | vascular plant one zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_50.3 |
Publications ? help Back to Top | |||
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