 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_5.72 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 596aa MW: 66893.9 Da PI: 6.4734 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_5.72 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 94.6 | 9.7e-30 | 136 | 221 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82
rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f
evm.model.supercontig_5.72 136 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFF 216
8*************************************999*****************************98..55667**** PP
trihelix 83 dqlea 87
+qlea
evm.model.supercontig_5.72 217 RQLEA 221
***85 PP
|
| 2 | trihelix | 65.4 | 1.2e-20 | 435 | 511 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkry.kkikegekkrtsesss 77
W+++e+ +Lie++ +m++r+++ g++++ lWee+s+km+ g+ersp +Ck+kw+ +n++ k+ke +kkr+++ s+
evm.model.supercontig_5.72 435 WPESEIAKLIELKASMDSRFEQsGCSEEILWEEISAKMACLGYERSPLMCKDKWDTINNYLtLKTKEYNKKRKEN-SR 511
********************9748***********************************9845888888887544.33 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046621 | Biological Process | negative regulation of organ growth |
| GO:0048442 | Biological Process | sepal development |
| GO:0048498 | Biological Process | establishment of petal orientation |
| GO:0090428 | Biological Process | perianth development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 596 aa
Download sequence Send
to blast |
MDDHHHHHHH QYAISDLRHL MNGRPSTHFS TSVIQQPAST AEMYRNLAQV PAQQHHQYEM 60
MMVGGGGGGG RQVGDFMARG LHEFCADTAT TSAAAAASVS AAAAAATVGI NAATPSFSGL 120
DADGGSFGGD IGGTGRWPRQ ETLTLLEIRS RLDPKFKEAN QKGPLWDEVS RIMSEEHGYQ 180
RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGESSNSV SVPETHYLGT 240
SLRYQGATNT NPHATQDPFL HSQKLCDSLS LSNNTSEFDT SSSDGAGGLM DNDSTEKRRK 300
RRGGRSWKTK IKEFIDLQMR KLMERQEVWL DKLTKTLEQK EQEKILREEE WRRQEAERID 360
REHKFWAKER ARLEARDAAM IEALQNLTGK QFSKTPSPEE LMGTDQIQNS NENQNENGSH 420
ETINTTTTTG NADSWPESEI AKLIELKASM DSRFEQSGCS EEILWEEISA KMACLGYERS 480
PLMCKDKWDT INNYLTLKTK EYNKKRKENS RTSDGGCGYF PSCESLYNQP NAFCEINEQG 540
PETIRLQTTD GSSPGSNSNA AGNSVGDSCF RFLMADGENL WENYGLKLSK GDENQ*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
