PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_489.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 307aa    MW: 34690.2 Da    PI: 5.5188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_489.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-07181225655
                                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                  +++ r RR++i ++ ++L +l+P         K++ ae+ + A +Y+k+Lq
  evm.model.supercontig_489.6 181 SIAARERRRKITEKTQKLAKLIPGgH------KMNTAEMFQAASKYVKYLQ 225
                                  67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.681175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-10178232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-8178228No hitNo description
SuperFamilySSF474592.36E-10179238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-5181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALSYCTTCW DSHQLLNSDM TTAMTSFQQF PFQDFQLPPD DLLASEYTHS SPSRLGSCNF  60
IDPFLPDDPF HYSHQSSFPP EILELDCSFQ YPKRQRTIHT NYYQPHIEQP SDLFNGYVPN  120
PSSVPLPEFY SLHEIQPPPP LMELQVPALP SVFDTGKVVS DEDDDQNVRK AGNGVSLSAQ  180
SIAARERRRK ITEKTQKLAK LIPGGHKMNT AEMFQAASKY VKYLQAQVGV LQLLSSLPQE  240
ELKPGKELQV LLSSPTIHEK LYWKEKCMVP GKLVEALADD HQIRTMHTIN DEIDKLLQNP  300
TCSSHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_489.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907490.11e-178transcription factor bHLH52-like
STRINGevm.model.supercontig_489.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-32bHLH family protein