PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 314aa    MW: 35398.5 Da    PI: 9.0297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13125176155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  evm.model.supercontig_48.15 125 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 176
                                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.34E-13123180No hitNo description
Gene3DG3DSA:4.10.280.105.3E-13123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16124193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEAVVFQQ DQLFTGYTTR DLYNLFGAGN WSFDGHFGFA RDEQDQDRNF LQNQTENLDQ  60
QPPNSTVSQT QFNELHHPNS SSCSNQYGTI DGSNSSANPT NVSTITRSKR RRSKSRKNKE  120
EIENQRMTHI AVERNRRKQM NEYLSVLRSL MPESYVQRGD QASIIGGAIN FVKELEHRLQ  180
LLGSQKEITN PERSDSVAPF SEFFTFPQYS TSSSSTRGGL VTHNSVAMNE EEQAAHVIIP  240
NSTQCAIADI EVTMVESHAN LKIRSRRRPK QLLKVVSGLH AMRLTVLHLN VSTVDQTVLY  300
SLSVKVRLKM TVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899054.10.0transcription factor bHLH94-like isoform X2
TrEMBLA0A2N9ED091e-115A0A2N9ED09_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_48.150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-68bHLH family protein