PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.140
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family RAV
Protein Properties Length: 335aa    MW: 38639.5 Da    PI: 5.6908
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.140genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.7e-104794255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++kG    + +g W A+I+       ++r++lg+f ++ eAa a++ a++kl+ 
  evm.model.supercontig_46.140 47 KFKGLVPQP-NGHWGAQIYIN-----YQRIWLGTFKSETEAAMAYDSAALKLRT 94
                                  566665455.799****9993.....4**********99************996 PP
2B388.74.7e-28169260183
                                   EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                   f k+ltpsdv+k++rlv+pkkfa ++          +g+  ++++l+++d++ r+W+++++y+ +s++yv+t+GW++Fvk+
  evm.model.supercontig_46.140 169 FHKELTPSDVSKLNRLVIPKKFAVKNfpnisgnayyNGN-LSDIQLIFYDRDMRVWKFRYCYWTSSESYVFTRGWNQFVKD 248
                                   89*************************999988887433.48899************************************ PP

                                   HT--TT-EEEEE CS
                            B3  72 ngLkegDfvvFk 83 
                                   ++Lk+g++v+F+
  evm.model.supercontig_46.140 249 KQLKAGEIVTFY 260
                                   ***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-1446103IPR016177DNA-binding domain
CDDcd000184.93E-2146102No hitNo description
SMARTSM003801.4E-1747108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1547102IPR001471AP2/ERF domain
PfamPF008476.7E-54794IPR001471AP2/ERF domain
PROSITE profilePS5103217.14847102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-32165264IPR015300DNA-binding pseudobarrel domain
CDDcd100174.13E-26167260No hitNo description
SuperFamilySSF1019365.62E-28167264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.098169282IPR003340B3 DNA binding domain
SMARTSM010194.9E-23169269IPR003340B3 DNA binding domain
PfamPF023625.2E-25169260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEEMQSVIS VDERNMVEEN VVFEYSDSNS INPSMPSNKC TKHGWSKFKG LVPQPNGHWG  60
AQIYINYQRI WLGTFKSETE AAMAYDSAAL KLRTKDSALN FELTSLSVKE LTFQGFYTNE  120
EVINMIRHGT YKFNFDCFLR TCAQQEDGGM SHSLGSLGGD EGTMCKKLFH KELTPSDVSK  180
LNRLVIPKKF AVKNFPNISG NAYYNGNLSD IQLIFYDRDM RVWKFRYCYW TSSESYVFTR  240
GWNQFVKDKQ LKAGEIVTFY ECTPSKKTNE EASNNFWVID VGDDLSYDMD FQVHLRHGKF  300
NYDKVEEEFA GDEVNQPVRN GDGKMFKLFG VWIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2716525910100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899217.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899218.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899219.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899220.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899221.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899222.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_021899223.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P52e-79RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
STRINGevm.model.supercontig_46.1400.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-79RAV family protein