PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.99
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 218aa    MW: 24288.2 Da    PI: 6.2683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.99genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-055678123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y+C+ C++ F++   L  H+++H
  evm.model.supercontig_44.99 56 YTCSFCKREFKSAQALGGHMNVH 78
                                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-65382No hitNo description
SMARTSM003550.00325678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1775683IPR007087Zinc finger, C2H2
PfamPF139121.7E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MERNSFNDKS VCSKAIRSCN NNQNNINEPM DSWICNNRSD EDDDYLGGFS WPPRSYTCSF  60
CKREFKSAQA LGGHMNVHRR DRARLRQSPS EDGQYTFLNL NLIPNPNSSS SSLRCPPFTR  120
TLPSLVSPPL SSLSSVAPTG RAWFMDGSLK ADPLGPEGSD LTKTKTAKSF FEVKELHGFI  180
QDGCDVLKKG EIVRLDLEIG LLTDSKEDLD LELRLGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-145178229superman protein
2l1o_A3e-145178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.99
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9873007e-37JX987300.1 Populus tomentosa isolate PtoSUP1 superman gene, complete cds.
GenBankKC8317607e-37KC831760.1 Populus davidiana SUP1 (SUP1) gene, complete cds.
GenBankKC8317627e-37KC831762.1 Populus tomentosa isolate a SUP1 (SUP1) gene, complete cds.
GenBankKC8317637e-37KC831763.1 Populus tomentosa isolate b SUP1 (SUP1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899488.11e-160transcriptional regulator SUPERMAN-like
TrEMBLM9WE192e-69M9WE19_POPEU; SUP1
STRINGevm.model.supercontig_44.991e-160(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-37C2H2 family protein