PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 118aa MW: 12445.8 Da PI: 8.6696 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.8 | 5.4e-17 | 37 | 73 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ evm.model.supercontig_3189.1 37 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 73 *****99999***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-13 | 30 | 82 | No hit | No description |
PROSITE profile | PS50114 | 10.211 | 31 | 82 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.9E-17 | 31 | 84 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-16 | 35 | 78 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.75E-15 | 36 | 84 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 37 | 64 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.7E-15 | 37 | 73 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MQRNKGQFTS SKKSEGGYNW GAVQESGQDD SQLETSCTHC GISSKSTPMM RRGPSGPRSL 60 CNACGLFWAN RGTLRDLSKK TQDQTLTPIE QGDGGGNEAG PGTAIHAQNS LNILVSK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3189.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912322.1 | 5e-78 | GATA transcription factor 25-like isoform X1 | ||||
Swissprot | Q9LRH6 | 4e-45 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A2I4HT33 | 3e-56 | A0A2I4HT33_JUGRE; GATA transcription factor 25 isoform X1 | ||||
STRING | evm.model.supercontig_3189.1 | 6e-82 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 2e-47 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3189.1 |
Publications ? help Back to Top | |||
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