 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_3143.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 395aa MW: 43520.7 Da PI: 5.4514 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_3143.1 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.8 | 1.6e-17 | 223 | 277 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
evm.model.supercontig_3143.1 223 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 277
778899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 127.6 | 5.5e-41 | 223 | 313 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
+kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+
evm.model.supercontig_3143.1 223 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 303
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreelk 92
ke +eLr +lk
evm.model.supercontig_3143.1 304 KELQELR-ALK 313
******9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MELGLSLGET AKPAALGFMD RADHQKDLGF CMGLSIGSTT TTSPPPSPPQ QHQEDQRHED 60
GDDQADDDDD SIDQNDTTAP KKARRSTISE ALYGTDHHEP VQLDLLPNTP VLPFDPSSAN 120
GSSEADSPGR QMMVGCLRGF DVNRAPNNTN NNLIDQDQRN NNEDGAAVSS SPNSGSASSL 180
QIDFCIYSGG GGNLKDGHHH DQLDRSRASS RGGSDEDENG STRKKLRLSK EQSAFLEESF 240
KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR 300
RLQKELQELR ALKTSSPFYM QLPATTLTMC PSCERVATNN PTTDSSPSAA TFINRPSRLA 360
SANYPFPQPT STNTSIIPTS RDDHNNIHVK NIEN*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 221 | 227 | TRKKLRL |
| 2 | 271 | 279 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
