PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.116
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 580aa    MW: 64369.6 Da    PI: 6.6395
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.116genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-12256312155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  evm.model.supercontig_25.116 256 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 312
                                   78*******************433.44555535555.779999**************98 PP
2AP246.49.6e-15357406355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm.model.supercontig_25.116 357 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406
                                   9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9256312IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15256322IPR016177DNA-binding domain
CDDcd000182.34E-18256322No hitNo description
PROSITE profilePS5103217.332257320IPR001471AP2/ERF domain
SMARTSM003804.8E-23257326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12257321IPR001471AP2/ERF domain
PRINTSPR003671.3E-6258269IPR001471AP2/ERF domain
CDDcd000182.19E-24355416No hitNo description
SuperFamilySSF541719.81E-18355416IPR016177DNA-binding domain
PROSITE profilePS5103219.137356414IPR001471AP2/ERF domain
SMARTSM003802.1E-34356420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18356414IPR001471AP2/ERF domain
PfamPF008471.8E-9357406IPR001471AP2/ERF domain
PRINTSPR003671.3E-6396416IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDQGLD RDEHGGFTHH HPHLSVMPLR SDGSLCVVDP FRRSSLSAAP  60
QEWRYENGVG ESEESPKLED FLGCCYSNSP SDDSKVYCQT EEDQTLSRIN VNIPPSFNTT  120
ETGDNDNITE PSSVYQAYTT YNQAPQTLIA TTDHHNLEAQ SNSLDVPSPN SGTTSYHLAF  180
ERASTVSGLK SWLRQTPFSG EKSSGEVDNV CNFQSLSLTM NPTSPAIARD DTRKRPAIAR  240
EPVPRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYDKEEKAA  300
RAYDLAALKY WGPTTHINFP LSTYEKELEE MKHMSRQEFV AMLRRKSSGF SRGASMYRGV  360
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV TNFDISRYDV  420
KRICSSSTLI ASDLAKRSPK DTAPTAIEDY NSCTSSASHQ PLLAISSGGP DELANLVWNT  480
DRDDNHQQQQ SGGADNGAPL IAVRSTDQSS SSSPHSPKCC VRIASEYGIG GGEDYSRSSY  540
FSSQNLKYEK RNDSNDDGEN GPGRLALAPQ VPIFALWNE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902967.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-133AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL40.0A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGevm.model.supercontig_25.1160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-131AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]