PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HD-ZIP

Protein Properties

Length: 273aa MW: 31052.4 Da PI: 4.7201

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_215.3	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.2e-21	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ F+ ++++ e++++LAkklgL+ rqV vWFqNrRa++k evm.model.supercontig_215.3 65 KKRRLTPEQVHLLEKSFAAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118 5678*************************************************9 PP
2	HD-ZIP_I/II	132.3	1.8e-42	64	154	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 ekkrrl+ eqv+lLE+sF +e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k evm.model.supercontig_215.3 64 EKKRRLTPEQVHLLEKSFAAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSVVK 145 69****************************************************************************** PP HD-ZIP_I/II 83 eveeLreel 91 e+e+L++e+ evm.model.supercontig_215.3 146 ENEKLKSEV 154 ****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.815	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.8E-20	63	124	IPR001356	Homeobox domain
CDD	cd00086	5.94E-19	65	121	No hit	No description
SuperFamily	SSF46689	3.38E-20	65	131	IPR009057	Homeodomain-like
Pfam	PF00046	4.7E-18	65	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-22	66	127	IPR009057	Homeodomain-like
PRINTS	PR00031	4.0E-6	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-6	100	116	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-17	120	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDSGRLFFDP STCHGNVLFL GNHDSLFRGG RSVINMEEAS RRRPFFSSPE DMFDEEYYDE 60 QLPEKKRRLT PEQVHLLEKS FAAENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDSLLSNY DSVVKENEKL KSEVLSLTVK LEAKEVSTEP VLGQISNPSA 180 AEMVHVSAVQ LSVKVEDRLS SGSGESVVMD EEGPQLLDSG DSYFPSNEYS ACVGTVSKED 240 DGSDDGRSYF SHVFVDADQQ QHEEHLGFWV WQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_215.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238629	0.0	AC238629.1 Carica papaya BAC clone 84J07, complete sequence.
GenBank	CP010988	0.0	CP010988.1 Carica papaya chromosome Y sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887047.1	0.0	homeobox-leucine zipper protein HAT5 isoform X1
Swissprot	Q02283	1e-106	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A061EJ86	1e-149	A0A061EJ86_THECC; Homeobox-leucine zipper protein HAT5
STRING	evm.model.supercontig_215.3	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8884	27	38
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-93	homeobox 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_215.3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]