PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_194.18

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 354aa MW: 36904.7 Da PI: 6.749

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_194.18	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.3	3.3e-08	233	270	26	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ae+eeL++kv+ L+aeN Lk+e+ +l+++++kl+ e+ evm.model.supercontig_194.18 233 AETEELARKVECLTAENVGLKSEIGQLTDKSDKLRREN 270 799*******************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	6.6E-36	1	92	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	6.8E-21	126	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.5E-5	233	268	No hit	No description
Pfam	PF00170	5.4E-7	233	270	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGNSEEGKSS KSDKSSSPAP ADQTNIHVYP DWAAMQAYYS PRVPIPPYYN SAMPSGHPPH 60 PYMWGPQPMM PPYGAPYAAI YSHGGVYAHP AVSLGSHSQG HGVPLSPATA TPLSIETPTK 120 SSGITDRSLM KKLKGFDGLA MSIGNGNTDS AEGAGEHGLS KSIDTEGSSD GSDGSTSGVD 180 QTKRKRRHEG TPTAGGKNQG QSGSVPAGDP AYNKVLGTAG GPANIIGNAS GTAETEELAR 240 KVECLTAENV GLKSEIGQLT DKSDKLRREN VALMEKLKNA QLVRTEEMGL NNVDDKRAAP 300 VNTENLLSRV NNSGSHDRST EQEGEVYEKK SNSGAKLHQL LGASPRADAV AAG*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGNSEEGKSS KSDKSSSPAP ADQTNIHVYP DWAAMQAYYS PRVPIPPYYN SAMPSGHPPH  60
PYMWGPQPMM PPYGAPYAAI YSHGGVYAHP AVSLGSHSQG HGVPLSPATA TPLSIETPTK  120
SSGITDRSLM KKLKGFDGLA MSIGNGNTDS AEGAGEHGLS KSIDTEGSSD GSDGSTSGVD  180
QTKRKRRHEG TPTAGGKNQG QSGSVPAGDP AYNKVLGTAG GPANIIGNAS GTAETEELAR  240
KVECLTAENV GLKSEIGQLT DKSDKLRREN VALMEKLKNA QLVRTEEMGL NNVDDKRAAP  300
VNTENLLSRV NNSGSHDRST EQEGEVYEKK SNSGAKLHQL LGASPRADAV AAG*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_194.18

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887548.1	0.0	G-box-binding factor 3-like
Swissprot	P42776	1e-98	GBF3_ARATH; G-box-binding factor 3
TrEMBL	B9RE16	1e-145	B9RE16_RICCO; Common plant regulatory factor CPRF-1, putative
STRING	evm.model.supercontig_194.18	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61
Representative plant	OGRP4346	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.2	3e-81	G-box binding factor 3

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_194.18

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]