PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_19.156

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 248aa MW: 27194.9 Da PI: 9.1374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_19.156	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L ++e +k+L evm.model.supercontig_19.156 69 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIEQVKDL 115 68***********************8.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.583	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-13	67	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-14	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.25E-10	69	118	No hit	No description
SMART	SM00353	1.3E-10	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	4.9E-6	153	215	No hit	No description
SuperFamily	SSF55021	4.73E-6	153	218	No hit	No description
CDD	cd04873	5.63E-6	156	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MENSYFYHSA WPELTNFSDS NDGESRCLFP WSVPPCVSAS PDSVQLHGCP SWSIPVEGVA 60 EDKAASVSKS HSQAEKRRRD RINAQLATLR KLIPKSDKMD KAALLGSVIE QVKDLKRKAT 120 EASKALSVPT EVDEVTVDDC AADSKGSSES AFFRATLCCD DRPEVFSELI RVLKGLKMSI 180 VRADISSVGG RMRSNLVMST KGSVSMSTLR QSLNVFLSRI ASSSVTSNCR IRSKRQRLFL 240 PSNFSHQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_19.156

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904097.1	0.0	transcription factor bHLH51-like
Swissprot	Q9XEF0	9e-57	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A061FT34	1e-103	A0A061FT34_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	evm.model.supercontig_19.156	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_19.156

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]