PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_181.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 229aa MW: 25516 Da PI: 9.99 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.6 | 8.4e-11 | 181 | 226 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+p LH +F + L G ++A Pk++l +m+v+ Lt ++++S LQ evm.model.supercontig_181.8 181 KQRMVWNPYLHLKF----NTL-GDKEARPKSLLTFMDVPELTQNQIASCLQ 226 79************....89*.9999************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.8E-4 | 1 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-10 | 179 | 226 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-7 | 181 | 226 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MMTSKTTTVS LKALQDGACL CFEKAISPQN VKDVWKHVIK KKRLDEIESN ARATNCVHQE 60 NKDQTLRKGV LEDEKINKGA TMSTSRKEVV TTDPKDSKGK KRGMDQGDNG NGVEKNQATM 120 NPLKMSQVGQ SAPVSNRKEP KVGARNEKSK VRKTKFSYEN ISGNATGEDD EEDKGENCAK 180 KQRMVWNPYL HLKFNTLGDK EARPKSLLTF MDVPELTQNQ IASCLQIK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_181.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | evm.model.supercontig_181.8 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8222 | 3 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16857.1 | 2e-08 | response regulator 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_181.8 |