PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.155
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 302aa    MW: 33527.4 Da    PI: 6.9563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.155genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-091261154
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                  r++ +  rE+ RRdr+N+ f +L + + ++     +K++K +iL  +++ +k+L
  evm.model.supercontig_17.155 12 RKMQKADREKLRRDRLNEHFLKLGKTIDPD----RPKNDKGTILADTIQLLKDL 61
                                  6778899********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-13879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-111083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5571161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-61261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.51E-61265No hitNo description
SMARTSM003537.1E-61767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEEELKDSNA ARKMQKADRE KLRRDRLNEH FLKLGKTIDP DRPKNDKGTI LADTIQLLKD  60
LTSEVNKLKA EYAMLTEESC ELTQEKNDLR EEKASLKSDI ENLNIQYQQR SRAIFPWAAM  120
DHSVVMAPPS YPFPMPVPMP PGPIPMHPSM QLQPYPFFGN QNPGVISAPV STYIPFMTPN  180
TMVEQQSTHV PPTMQPGNRS QVSGKQDSRS KSSRESKADK TEDSNDVATD LELKTPGSTV  240
DQDLSSGQRK SKKPWKDENS SKEGSSSSRC SSSPSGQDSS SNSIVGGRSS DVLEGKKDQQ  300
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904730.10.0transcription factor bHLH121 isoform X2
SwissprotQ9LT231e-102BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A061E6871e-148A0A061E687_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGevm.model.supercontig_17.1550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-94bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]