PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.38
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 389aa    MW: 44372.6 Da    PI: 8.0782
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.38genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-1072128155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a+ k++g
  evm.model.supercontig_14.38  72 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEEAAARAYDLAAIKYWG 128
                                  789******************88887784446666.9*******************98 PP
2AP252.41.3e-16171222155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  evm.model.supercontig_14.38 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
                                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-1472137IPR016177DNA-binding domain
PfamPF008474.9E-872128IPR001471AP2/ERF domain
SMARTSM003804.4E-1773142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-1273136IPR001471AP2/ERF domain
PROSITE profilePS5103218.05773136IPR001471AP2/ERF domain
PRINTSPR003675.8E-57485IPR001471AP2/ERF domain
PfamPF008474.8E-12171222IPR001471AP2/ERF domain
CDDcd000186.04E-24171232No hitNo description
SuperFamilySSF541716.54E-18171232IPR016177DNA-binding domain
SMARTSM003806.4E-26172236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-18172231IPR001471AP2/ERF domain
PROSITE profilePS5103218.755172230IPR001471AP2/ERF domain
PRINTSPR003675.8E-5212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEMIMVKNEE IQGRRRVYIP SDGEIQEKRC VKRRRREPAS AAVGCYNDNQ NQQQQPSDHQ  60
TSSAATTVKR SSRFRGVSRH RWTGRFEAHL WDKLSWNVTQ KKKGKQGAYD EEEAAARAYD  120
LAAIKYWGKS TFTNFPIPEY EAEIEIMQNL TKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGIHAVTNFD LSSYIRWLKP  240
AANAGNHEPA EKLVTPVLML RDEAKPPFLS SNSFSATAKF INSPAEDQQV FQAKLPVINS  300
YNKSSSPTAL DLLLRSSIFR ELMEKNSSNV SDQDEADYGD AEIKNIQLVA SDHDDDFGGF  360
NFYDEVTEVP FICSTNKHLE ERELQIIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11335RRRVYIPSDGEIQEKRCVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905240.10.0AP2-like ethylene-responsive transcription factor At1g79700
RefseqXP_021905241.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLB9IJT71e-171B9IJT7_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_14.380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-77AP2 family protein