PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.66
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 470aa    MW: 54149.3 Da    PI: 10.417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.66genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-1224113298
                                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                   fk+    d+l+ g l +p kf +++g+    +  + l  + g +W+v +  +k++++ +l+ GW+ F +   L  g  v+F
  evm.model.supercontig_132.66  24 FKII-LQDSLRDGKLKIPDKFWQKFGSG--LPSSVELVAPCGAVWRVGV--TKSDREGWLQHGWRIFSEHYSLSHGHLVLF 99 
                                   5544.478999999***********755..55579999***********..****************************** PP

                                   EE-SSSEE..EEEEE- CS
                            B3  83 kldgrsefelvvkvfr 98 
                                   +++g+ ef  ++ +f+
  evm.model.supercontig_132.66 100 RFNGDGEF--HIIIFD 113
                                   *9887666..888876 PP
2B359.55.9e-19357451396
                                   EE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                            B3   3 kvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                                    v++p +v+ + ++l +pk fae+h  ggk     ++ l++++grsW +++++  +++++r ++ + W+ Fv+ n+Lk+gD
  evm.model.supercontig_132.66 357 VVMKPCYVNPKkSNLQIPKVFAERHlkGGK----GEVHLQTQDGRSWYLRYNVqlSGGRSRAYFDSRWRAFVQGNNLKVGD 433
                                   56666666644478***********74333....37***************8877888888******************** PP

                                   EEEEEE-SSSEE..EEEE CS
                            B3  79 fvvFkldgrsefelvvkv 96 
                                   ++ F+l++  +  ++v +
  evm.model.supercontig_132.66 434 TCFFELIRGPKSVFNVVI 451
                                   ******977554445554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2116115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-2019122IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-1421113No hitNo description
PROSITE profilePS5086311.91422115IPR003340B3 DNA binding domain
SMARTSM010191.5E-823115IPR003340B3 DNA binding domain
PfamPF023623.4E-924113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13210304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-15213304IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-12217302No hitNo description
SMARTSM010193.6E-5218304IPR003340B3 DNA binding domain
PROSITE profilePS508638.022261304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-24348455IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-23349456IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-19353453No hitNo description
SMARTSM010193.3E-12355455IPR003340B3 DNA binding domain
PfamPF023623.8E-17355452IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493356455IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAVSGRKEGI FSQLKFRAET PHFFKIILQD SLRDGKLKIP DKFWQKFGSG LPSSVELVAP  60
CGAVWRVGVT KSDREGWLQH GWRIFSEHYS LSHGHLVLFR FNGDGEFHII IFDMTATEID  120
YPFVGSNGEA VDPREEGSKE RPRRKRRDKS PLPLPCPNPS KSFKTNSSSV KVRDRHEGLS  180
SDRLRQEKVP NIVEPLEADE EFKALQKAMA FKSINAFFLI VMQPSYINSE YPLKIPVWFV  240
KKYLTEKRRE VILQILDGRK TNGRFYCKWK AFAENNKLEV RDVCVFELIN RTQILFNVII  300
YRNNDSPNCS RSQGMLSTTT IKCQNSEDYQ SVLLTTRNKI VCKRPLTFNS KNPFFVVVMK  360
PCYVNPKKSN LQIPKVFAER HLKGGKGEVH LQTQDGRSWY LRYNVQLSGG RSRAYFDSRW  420
RAFVQGNNLK VGDTCFFELI RGPKSVFNVV IKRAKEDANH GLTTRFRGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144RPRRK
2143148RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.66
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890131.10.0B3 domain-containing transcription factor VRN1-like
STRINGevm.model.supercontig_132.660.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein