PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 432aa    MW: 49149.7 Da    PI: 10.4023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.6e-13332407180
                                   EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ff v ++++ +k++++  +p  fa+eh +k+      ++  +   sW vkl   +++gr+++++GW  F+++n L++gD++
  evm.model.supercontig_132.63 332 FFMVVISPHCFKHHCVqHIPAGFAKEHIKKHD---ICSIVETADGSWAVKL--INSGGRFTFSAGWAVFARENSLQQGDVC 407
                                   666777888888865559*********54433...3566678889******..9**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-61774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-52074IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-13154248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-16155248IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-13160246No hitNo description
SMARTSM010191.2E-4162248IPR003340B3 DNA binding domain
PROSITE profilePS508638.557205248IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-7254294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-6258295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.205260295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13328408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-15328407IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-10331407No hitNo description
PfamPF023629.5E-10332407IPR003340B3 DNA binding domain
SMARTSM010192.6E-6333421IPR003340B3 DNA binding domain
PROSITE profilePS508639.573333431IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAVSGRKQRV FFQLKFTAEE LHFFEIILQD SLRDGKLKIP EKFWGKFGNG IPGSVKLVAP  60
CGAVWRVGVT KSDREASGPR EVGSKEKPCR KRKDKSTLPC PKPSKSLKTY SASEKVRDRH  120
EGLFSDGFRQ GKVPKGVEPL AADEESKALQ RAMAFKSNNP LFLIVMQPSY IDSEYPLKIP  180
VWFVKKYLTE KHREVILQIL DGRKTDGRFY CKWKAFAEIN KLEVGDVCVF ELFNRTQPLF  240
NVIIYRNNDR PNCSRSQDRW RAFVQGNNLK VGDTCFFKLI RGPKTMFNVD IKRATGDANH  300
GLTTRYEGSE KTRKHSSQAT ASGRKFVSKY PFFMVVISPH CFKHHCVQHI PAGFAKEHIK  360
KHDICSIVET ADGSWAVKLI NSGGRFTFSA GWAVFARENS LQQGDVCAGN LMKMINTFGN  420
DQKHRIFEFR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1431241328129B3 domain-containing transcription factor VRN1
4i1k_B3e-1431241328129B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RKRKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890131.11e-132B3 domain-containing transcription factor VRN1-like
STRINGevm.model.supercontig_132.630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-15B3 family protein