PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.62
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 493aa    MW: 55950.1 Da    PI: 9.9664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.62genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1524113298
                                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                   fk+    d+l+ g + +p kf +++g+    s  ++l ++ g +W+v +  +k++ + +l+ GW+eF +   L  gD vvF
  evm.model.supercontig_132.62  24 FKII-LQDSLRDGKFKIPEKFWQKFGSG--ISSSVKLVTPCGAVWRVGV--TKNDLEGWLQHGWREFSEHYSLSRGDLVVF 99 
                                   5544.478999999***********755..5668***************..99999999********************** PP

                                   EE-SSSEE..EEEEE- CS
                            B3  83 kldgrsefelvvkvfr 98 
                                   ++dg+  f  ++++f+
  evm.model.supercontig_132.62 100 RYDGDGIF--YITIFD 113
                                   **998777..888887 PP
2B355.69.8e-18200296198
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkeg 77 
                                   ff + +++++ +s+ l++p  f++++  +k++  +++l+ ++g sW+v + +    r++ gr++ +  Wk F+++n+L++g
  evm.model.supercontig_132.62 200 FFLIVMQPSYINSA-LTIPVWFVKKYLTEKHG--EMILQILDGTSWTVGYDVavwnRRTHGRFYCK--WKAFAEDNNLEVG 275
                                   67778899999998.***********645444..8999************7777444444556666..************* PP

                                   -EEEEEE-SSSEE..EEEEE- CS
                            B3  78 DfvvFkldgrsefelvvkvfr 98 
                                   D++vF+l++r +  ++v ++r
  evm.model.supercontig_132.62 276 DVCVFELIKRAQLMFKVIIYR 296
                                   ********9888877776666 PP
3B352.77.6e-173634441596
                                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                   +  +pk fae+h  k+ ++ ++ l++++grsW++++++  ++gr    + + W+ Fv+ n+Lk+gD++ F+l+   ++ ++
  evm.model.supercontig_132.62 363 NSQIPKGFAERHL-KE-GKGEVHLQTQDGRSWDLQYNVHVSGGRlrAHFDSRWRTFVQGNNLKAGDTCFFELIPGPKTMFN 441
                                   357*********4.33.3449***************98555555558899*********************9955555455 PP

                                   EEE CS
                            B3  94 vkv 96 
                                   v +
  evm.model.supercontig_132.62 442 VVI 444
                                   555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2217115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-2119122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1621113No hitNo description
PROSITE profilePS5086312.90122115IPR003340B3 DNA binding domain
SMARTSM010191.5E-1123115IPR003340B3 DNA binding domain
PfamPF023621.0E-1124113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22193299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-23194299IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-20199296No hitNo description
PROSITE profilePS5086312.083199298IPR003340B3 DNA binding domain
PfamPF023621.0E-15200297IPR003340B3 DNA binding domain
SMARTSM010197.2E-12201298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21341447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-20342448IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-18346446No hitNo description
SMARTSM010198.6E-9348446IPR003340B3 DNA binding domain
PfamPF023623.2E-15348445IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802349448IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAVSGRKQGG FSQLKFTAET PHFFKIILQD SLRDGKFKIP EKFWQKFGSG ISSSVKLVTP  60
CGAVWRVGVT KNDLEGWLQH GWREFSEHYS LSRGDLVVFR YDGDGIFYIT IFDMTATEID  120
YPFVGSNGEV FGPREEGTKE RPCRKRRDKS PLPCPKPFKS IKTYPASEKV GGKNCDDSLA  180
ADEKSKAIQK AIAFKSNNPF FLIVMQPSYI NSALTIPVWF VKKYLTEKHG EMILQILDGT  240
SWTVGYDVAV WNRRTHGRFY CKWKAFAEDN NLEVGDVCVF ELIKRAQLMF KVIIYRNNGS  300
PNCYQTQGMS STTRKCLNSE ECPTVQPTTW NKIACQRPLV FNSKNPFFVV VMKPCHVNPK  360
KTNSQIPKGF AERHLKEGKG EVHLQTQDGR SWDLQYNVHV SGGRLRAHFD SRWRTFVQGN  420
NLKAGDTCFF ELIPGPKTMF NVVIKRAKKD ANHGLTTRYE GECRKLKMET GVETTQKHSS  480
QATASGREFG SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1417829826143B3 domain-containing transcription factor VRN1
4i1k_B6e-1417829826143B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.62
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890120.10.0B3 domain-containing transcription factor VRN1-like isoform X2
STRINGevm.model.supercontig_132.620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16925512
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-24B3 family protein