 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_128.45 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 457aa MW: 53706.6 Da PI: 7.4347 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_128.45 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 95.4 | 5.2e-30 | 82 | 167 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
rW++qe+l+L+++r++++++++++++k+plW evs+ m +e+g+ers k+C+ek+enl k+ykk+keg+ +r ++ ++++
evm.model.supercontig_128.45 82 RWPRQETLTLLQIRSRLDSKFKEANQKGPLWNEVSRIMlEEHGYERSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYR 160
8*************************************99******************************98..55667** PP
trihelix 81 yfdqlea 87
+f+qlea
evm.model.supercontig_128.45 161 FFRQLEA 167
*****85 PP
|
| 2 | trihelix | 43.2 | 1e-13 | 354 | 414 | 26 | 86 |
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
l + Wee+ km g+er++++Ckekwen++ + i+e +kkr+++ ++ +yf++le
evm.model.supercontig_128.45 354 LPRGIWEEIEGKMGCLGYERTSNECKEKWENMQINFNIITECNKKRKEDLRNYRSYFQELE 414
55678*****************************************999999999****98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MGENDDGQYE LTDLRRVLAG RNQYFPANPQ PQNPDYDHHH FLHRNMLQQS AATSRLVLPP 60
VAAAGGSVGF DHNHFNDTNH SRWPRQETLT LLQIRSRLDS KFKEANQKGP LWNEVSRIML 120
EEHGYERSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ADRTNQPNQD 180
QSLSYSNNTS DQFETSSSTD NNDQNHDLSA IAFMMNQTQK RENDVDQFHG CERVRSRRGW 240
KEKVKEFVES EMRKVMEKQE VWMENMVKNI EEREKERLCK EEEWRKNEVA RLNLVHESWV 300
KERAKVEARD AALMEVLNKL TSKRVPQVSS SHIQSSELSS LGLPRSYQET SGYLPRGIWE 360
EIEGKMGCLG YERTSNECKE KWENMQINFN IITECNKKRK EDLRNYRSYF QELEQPYNGG 420
QQNISKERLE INEDLSSNSY GDNLTHQWGL LSHSQK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC184063 | 1e-37 | AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence. |
| GenBank | AC214419 | 1e-37 | AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence. |
