PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_104.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NF-YA | ||||||||
Protein Properties | Length: 492aa MW: 54775.9 Da PI: 9.1672 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.1 | 1.7e-29 | 189 | 245 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ e+k ++srkpy+h SRh hA+rRpRg+gGrF evm.model.supercontig_104.9 189 DGPIYVNAKQYHGIIRRRQSRAKAVLENKA-TRSRKPYMHYSRHLHAMRRPRGCGGRF 245 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.1E-33 | 187 | 248 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.631 | 188 | 248 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-21 | 191 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.0E-26 | 191 | 245 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-21 | 222 | 245 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF05938 | 1.2E-25 | 384 | 482 | IPR010264 | Plant self-incompatibility S1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MAMQTVYFKE HEGVVHNPTG QFSSVPQASR WGAFGSQSVY VEACGQFKSL SMENTAGGFQ 60 LAAAKQRGTC TDQGPDKGTV TPFTIFPVDK SVIYTIGREL GGARVYGPRM SDPVLIGDRK 120 NSAHGHKPQG TTAVQSALSD YHAGFELGFG QPMICAKYAY MDQCYGLFSA YAPQISGRIM 180 LPLNLTTDDG PIYVNAKQYH GIIRRRQSRA KAVLENKATR SRKPYMHYSR HLHAMRRPRG 240 CGGRFLNTKN LDSIKGATEV KNASEGKLYL LTGSQNSDSE VLQSDSGTLN SSKETNGIGS 300 NLSGSEVTSL YSRRDIGHFS INHLGSSVRS FSSILDSGHS IVMPTKWEED KSITGMKSIR 360 HRTLAILFML LFGLSKSTAK GKTRVRVVNK LGTNRIMNIH CQSRDDDLGY HAILDGSEIE 420 WKFAVNFWGT TLYYCDVQWD YSKWHHFDAY SSELHYDRCK TECIWMVTKD GLFNFNEEFG 480 NWVLVPFQDS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-18 | 191 | 253 | 4 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_104.9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892429.1 | 0.0 | nuclear transcription factor Y subunit A-10-like, partial | ||||
TrEMBL | A0A061EVQ6 | 1e-145 | A0A061EVQ6_THECC; Nuclear transcription factor Y subunit A-10, putative | ||||
STRING | evm.model.supercontig_104.9 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 | Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-53 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_104.9 |