PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.140
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 393aa    MW: 45799.3 Da    PI: 9.0096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.140genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-137713299
                                  --SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3 32 esktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                   +k  +l+  +gr+W+v+l  +k+++  ++l++GW+eF++   L  g f+vF+++g++ f  +v +f+ 
  evm.model.supercontig_10.140  7 MPKVAVLNVADGREWRVEL--KKYGENdFWLENGWEEFARHYSLSYGHFLVFRYHGNEAF--HVLIFDV 71
                                  5666778889*********..7777767****************************9999..9999985 PP
2B355.31.2e-17170262598
                                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 
                                   + p +v  + +l +p kf+++h ++++++  ++l+  + rsW v ++ +++ g+   ++ + W+eFv++n+L++gD++ F+
  evm.model.supercontig_10.140 170 MRPTYVAPLFILNVPYKFCKNHFKQERGE--VVLMM-NKRSWLVHYRLENCNGKpkAIFHRSWREFVEDNNLRAGDICDFE 247
                                   67889999999***********8786664..44443.47*******996666656699*********************** PP

                                   E-SSSEE..EEEEE- CS
                            B3  84 ldgrsefelvvkvfr 98 
                                   l+++s+  l+v++f+
  evm.model.supercontig_10.140 248 LIRSSKHCLNVTIFS 262
                                   **9999989999986 PP
3B351.51.9e-163053801794
                                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                            B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                   v+pk+f+++h++  e+s+ +++   +++ W vkl    ++++y+l++GW  F+k n L++gD++ F+l+++ +  +++
  evm.model.supercontig_10.140 305 VIPKEFVRKHMKGDERSVRVRMGEGESKWWVVKL--LHYPSAYILSAGWTAFAKYNSLQQGDICKFQLINKPQSLFKI 380
                                   8*********66668999999999999*******..9*******************************9875553454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.479172IPR003340B3 DNA binding domain
SMARTSM010190.0072372IPR003340B3 DNA binding domain
CDDcd100172.34E-11370No hitNo description
PfamPF023621.5E-10570IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-15571IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-161082IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-24159262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-20161265IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-18164262No hitNo description
SMARTSM010193.1E-13166264IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647166264IPR003340B3 DNA binding domain
PfamPF023621.3E-14170262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-16280380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-15297375IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-5302386IPR003340B3 DNA binding domain
CDDcd100177.79E-12305374No hitNo description
PfamPF023621.1E-12305375IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899305386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGIGEEMPKV AVLNVADGRE WRVELKKYGE NDFWLENGWE EFARHYSLSY GHFLVFRYHG  60
NEAFHVLIFD VTATEIQYPS SPPTILEQNH HQHQHQHQHQ SSVDHQFMKP IKRTVSPLMS  120
SPRPSKMMRT AISTSKTHLG ISGGDHKRGL NSDDDDDDDD QKNPSFSVYM RPTYVAPLFI  180
LNVPYKFCKN HFKQERGEVV LMMNKRSWLV HYRLENCNGK PKAIFHRSWR EFVEDNNLRA  240
GDICDFELIR SSKHCLNVTI FSGFDQEKKK MISAGRDFSS TETPFFEVVI QYKGSVWMWM  300
WMVQVIPKEF VRKHMKGDER SVRVRMGEGE SKWWVVKLLH YPSAYILSAG WTAFAKYNSL  360
QQGDICKFQL INKPQSLFKI SIVSPPSSSF YL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_10.140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906565.13e-98B3 domain-containing transcription factor VRN1-like
STRINGevm.model.supercontig_10.1400.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-27B3 family protein