PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1.45

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 372aa MW: 41587 Da PI: 7.5738

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1.45	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.7	1.5e-18	28	70	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 kr en rq t++ R++gi+KKA+ELS+LCd+++ +++fs+t evm.model.supercontig_1.45 28 KRLENINGRQATYAERKHGIMKKANELSILCDIDIVLLMFSPT 70 68899999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-23	20	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.077	20	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-22	20	103	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.29E-22	21	102	No hit	No description
PRINTS	PR00404	3.2E-14	22	42	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-15	30	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-14	42	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-14	57	78	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEGSKHNGKT SGKVKASCGM GRVKLKIKRL ENINGRQATY AERKHGIMKK ANELSILCDI 60 DIVLLMFSPT SGKPSLCTGR RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD 120 VNIQEFMGTS NQTIEDLTNQ ARLLQTQLSE IHRRLSYWTN PEKISNVEHL EQMENSLRES 180 LNQIRAHREN LGKQQLISLE CTSQIQPSMH MPFGMGAEQQ LQPLSWIPNN ENRSIALPEE 240 PNLLPHRDVE CSASSSFGSY SGYFGTGKSS DISNSGQESC ILNDLTGTAQ LRLQMNGHYP 300 YLPYNLNLLN DTKFQPLADI NLQETHVDYH VNGILDAPRP GYDTTQASWA STSGPCAVTV 360 FDDPLFGRQP N*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEGSKHNGKT SGKVKASCGM GRVKLKIKRL ENINGRQATY AERKHGIMKK ANELSILCDI  60
DIVLLMFSPT SGKPSLCTGR RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD  120
VNIQEFMGTS NQTIEDLTNQ ARLLQTQLSE IHRRLSYWTN PEKISNVEHL EQMENSLRES  180
LNQIRAHREN LGKQQLISLE CTSQIQPSMH MPFGMGAEQQ LQPLSWIPNN ENRSIALPEE  240
PNLLPHRDVE CSASSSFGSY SGYFGTGKSS DISNSGQESC ILNDLTGTAQ LRLQMNGHYP  300
YLPYNLNLLN DTKFQPLADI NLQETHVDYH VNGILDAPRP GYDTTQASWA STSGPCAVTV  360
FDDPLFGRQP N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1.45

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910461.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	1e-120	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A061EA58	0.0	A0A061EA58_THECC; AGAMOUS-like 65
STRING	evm.model.supercontig_1.45	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39
Representative plant	OGRP5946	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-102	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1.45

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]