PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_38802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 11844.4 Da PI: 8.5049 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.8 | 5.1e-17 | 19 | 64 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ en+ qvtfsk r ++KKA+EL++LC +v +iifs+ ++ evm.TU.contig_38802.1 19 KKMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIIFSPGNRA 64 56899999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-20 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.549 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-16 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.28E-22 | 13 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-19 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-16 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-16 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MADEGTSSKS KSRQKIESKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIIFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPARDP HNDNDTQQTI SRIIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_38802.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-162 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 3e-63 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-30 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0L9U023 | 5e-31 | A0A0L9U023_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3V1E3 | 5e-31 | A0A1S3V1E3_VIGRR; agamous-like MADS-box protein AGL62 | ||||
STRING | evm.model.supercontig_758.3 | 2e-69 | (Carica papaya) | ||||
STRING | evm.TU.contig_38802.1 | 1e-72 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-33 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_38802.1 |
Publications ? help Back to Top | |||
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