PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_33091.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 11605.7 Da PI: 11.0733 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.2 | 2.4e-09 | 24 | 49 | 24 | 49 |
HHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 24 AeELSvLCdaevaviifsstgklyey 49 A+ELS+LC+a++a+iifs+ k++ + evm.TU.contig_33091.2 24 ASELSTLCGAKIAIIIFSPGRKVFSF 49 9******************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.979 | 4 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-10 | 6 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-12 | 7 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-9 | 24 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MARKSKGRQK VEMVKMNNES NLQASELSTL CGAKIAIIIF SPGRKVFSFG HPCVEIVLEH 60 FVSGNPPQVA SGTMKLIESH RNTSVRKLNM QLTQVLNQLK IKKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_33091.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238637 | 1e-117 | AC238637.1 Carica papaya BAC clone 99B01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911217.1 | 1e-59 | agamous-like MADS-box protein AGL62, partial | ||||
Swissprot | Q9FKK2 | 3e-36 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 7e-47 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_33091.2 | 3e-70 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-38 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_33091.2 |
Publications ? help Back to Top | |||
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