PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_30005.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 118aa MW: 13082.2 Da PI: 10.9213 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.7 | 5.6e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr+g++KKA+ELS+LC+ae+ i+fs+ +k++ + evm.TU.contig_30005.4 16 MNNESNLQVTFSKRRAGLFKKASELSTLCGAEIDTIVFSPGQKVFSF 62 689****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-30 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.226 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.61E-32 | 7 | 74 | No hit | No description |
SuperFamily | SSF55455 | 5.1E-26 | 7 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MARKSKGRQK VEMAKMNNES NLQVTFSKRR AGLFKKASEL STLCGAEIDT IVFSPGQKVF 60 SFGHPCVQTV LERFVSSNPP QAASGTMKLI EAHRNTSVRE LNMQLTQVLN QLKIEKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-18 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_30005.4 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-150 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912037.1 | 4e-77 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-49 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 8e-61 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_30005.4 | 3e-81 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-52 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_30005.4 |
Publications ? help Back to Top | |||
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