PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_27490.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 315aa    MW: 34670.6 Da    PI: 5.706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_27490.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10227270755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  evm.TU.contig_27490.2 227 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 270
                            5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-12220277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13220279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.69E-12222274No hitNo description
SMARTSM003539.9E-12226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7228270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPLARDYMGS VQPCDFTGDY SSPETCVFEE GDRVPDKTSL ASKSFTMSNS PPNSRPTSTV  60
SSTGFVLTAA DHHFEPEGSL INFRTGYDAF MVGNGSLLSF GERAGYPKTS SEYSGWEGEF  120
NQSYHWNQIN PKSSSDLRLV DDFNCFETAG NLYSEAKESH GDHWLYSEAT IVTADSIQES  180
ASPEVVACLK RPHMEESMQA LKKQCSSSST SRKAKIKSSP SKDPQSIAAK NRRERISERL  240
KILQELVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPVQGGKAP DISQVKEAID  300
AILSSQKDRN SSSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_27490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911895.10.0putative transcription factor bHLH086
TrEMBLA0A061EH341e-121A0A061EH34_THECC; Rhd six-like 1, putative
STRINGevm.TU.contig_27490.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.19e-69RHD SIX-LIKE 1